Program
Aug. 26, 2008
9:30-9:40 | Opening |
9:40-10:20 | Stu G. Whittington (Canada) Counting almost unknotted embeddings of graphs and surfaces |
10:20-10:50 | coffee break |
10:50-11:30 | Akio Kawauchi (Osaka City Univ.) On a complexity of a spatial graph |
11:30-12:10 | Yuanan Diao (USA) Jones Polynomials of Knots Formed by Repeated Tangle Replacement Operations |
12:10-13:40 | Lunch |
13:40-14:20 | Chris Soteros (Canada) THE LINKING PROBABILITY FOR 2-COMPONENT LINKS WHICH SPAN A LATTICE TUBE |
14:20-15:00 | Jason Cantarella (USA) A new proof that every tight knotted tube (other than the unknot) has a self-contact |
15:00-15:30 | coffee break |
15:30-16:10 | Claus Ernst (USA) The Linearity of the Ropelengths of Conway Algebraic Knots in Terms of Their Crossing Numbers |
16:10-16:50 | Eric Rawdon (USA) The Effect of Knotting on the Size and Shape of Polymers |
16:50-17:30 | Cristian Micheletti (Italy) Simulations of knotting in confined circular DNA |
Aug. 27, 2008
9:00-9:40 | Mitchell Berger (UK) Magnetic Writhe and Braiding |
9:40-10:20 | S. Yamazaki (Okayama Univ.) Topological mechanism of nucleation of cyclic polyethylene |
10:20-10:40 | coffee break |
10:50-11:30 | T. Okui (Tokyo Inst. of Tech.) Topological Effect on Polymer Crystallization - Linear and Ring Polymers - |
11:30-12:10 | Atsushi Takano (Nagoya Univ.) Chain dimension of ring polystyrenes in solutions |
12:10-13:40 | Lunch |
13:40-14:20 | A. Ikai (Tokyo Inst. of Tech.) Stabilization of a protein structure by pseudo-knot formation |
14:20-15:00 | Peter Virnau (Germany) Knots in globular polymers and proteins |
15:00-15:30 | coffee break |
15:30-16:10 | Todd O Yeates (USA) Discovering, Engineering, and Exploring Knots in Proteins |
16:10-16:50 | Joanna I. Sulkowska (USA) Dynamics of knots in proteins |
16:50-17:30 | Poster session |
Aug. 28, 2008
9:00-9:40 | K. Yoshikawa (Kyoto Univ.) Packing a semi-flexible molecular chain |
9:40-10:20 | Giovanni Dietler (Switzerland) Single Molecule Imaging Study of the Effects of Topology on the Statistical Properties of DNA |
10:20-10:40 | coffee break |
10:50-11:30 | Stephen Levene (USA) DNA Topology Meets Nanotechnology: A New Approach to DNA Hybridization |
11:30-12:10 | Lynn Zechiedrich (USA) Bullied no more; DNA bullies biology |
12:10-13:40 | Lunch |
13:40-14:20 | Andrzej Stasiak (Switzerland) DNA supercoiling inhibits DNA knotting |
14:20-15:00 | Koya Shimokawa (Saitama Univ.) Tangle analysis of DNA catenane unlinking by the Xer/FtsK system |
15:00-15:30 | coffee break |
15:30-16:10 | Julia Yeomans (UK) Polymer dynamics in confined spaces |
16:10-16.40 | Takeaki Araki (Kyoto Univ.) Monte Carlo simulation of nematic liquid crystal in porous media: The topological constraint and surface anchoring effect |
16:40-17:00 | S. Saka (Keio Univ.) Average Structure of a Single Knotted Ring Polymer |
17:00-17:20 | Naoko Kanaeda (Ochanomizu Univ.) Intrinsic viscosity of knots in solution evaluated through the Brownian Dynamics |
17:20-17:30 | Naomi Hirayama (Ochanomizu Univ.) Linking probabilities of self-avoiding polygons |
18:00 | banquet |
Aug. 29, 2008
9:00-9:40 | Tom Kephart (USA) Knots and Links in Semi-classical Systems |
9:40-10:20 | Olivier Pierre-Louis (UK) Knots in stiff strings |
10:20-10:40 | coffee break |
10:50-11:30 | Attilio Stella (Italy) Topological signatures of the thermodynamics of swollen and globular polymer rings |
11:30-12:10 | Kyoichi Tsurusaki (Kanagawa Industrial Tech. Inst.) Analysis on topological effects of polymer systems using link and knot invariants |
12:10-13:40 | Lunch |
13:40-14:20 | Jun O'Hara (Tokyo Metropolitan Univ.) Configuration space of small equilateral and equiangular n-gons (n < 6) |
14:20-15:00 | K. Taniyama (Waseda Univ.) Unknotting numbers of diagrams of a given nontrivial knot are unbounded |
15:00-15:30 | coffee break |
15:30-16:00 | K. Ishihara (Saitama Univ.) Minimal step number of knots with small crossing number |
16:00-16:20 | S. Araki (Kyoto Univ.) The hierarchical structure of chromatin(by S. Araki, K. Hizume, K. Takeyasu, and K. Yoshikawa) |
16:20-16:50 | T. Deguchi (Ochanomizu Univ.) Novel criticality of random knots at the theta temperature |
16:50-17:00 | Closing |
Poster presentations / Aug. 27, 2008
1) | Makoto Ozawa (Komazawa Univ.) Rational structure on algebraic tangles and closed incompressible surfaces in the complements of algebraically alternating knots and links |
2) | Shinya Saka (Keio Univ.) Relaxation of a Single Knotted Ring Polymer |
3) | Ryo Hanaki (Waseda Univ.) On Psuedo Diagrams of Knots, Links and Spatial Graphs |
4) | Jiro Suzuki (J-PARC Center) Topological effect in ring polymers studied by Monte Carlo Simulation |
5) | Shugo Yasuda (Kyoto Univ.) Multi-scale hybrid simulation for softmatters |
6) | Naoko Kanaeda (Ochanomizu Univ.) Diffusion of a circular DNA in solution by the Brownian Dynamics |
7) | Naoko Kanaeda (Ochanomizu Univ.) Diffusion of a supercoiled DNA and the effect of base flipping by the Brownian dynamics |
8) | Naomi Hirayama (Ochanomizu Univ.) Linking probabilities of self-avoiding polygons |
9) | Yoko Akita (Ochanomizu Univ.) Distance distribution of random knots |